Some 2003-2020 Expedition/Navigator and 2006-2020 F-150 vehicles equipped with TOD transfer cases may exhibit grinding/clicking/ratcheting noise from the front wheel area. This may be due to partial engagement of the integrated wheel ends (IWE). To correct this condition, follow the Service Procedure steps to remove and cap the vacuum supply line.
full bulletin at NHTSA ↗2006 Lincoln Navigator electrical problems
severe Owners of the 2006 Lincoln Navigator have filed 7 NHTSA complaints about the electrical at roughly $850 to repair (U.S. federal records, as of August 2026). Source: NHTSA Office of Defects Investigation. See electrical across all vehicles →
Complaints
7
Recalls
0
Avg fix
$850
| Model year | electrical complaints |
|---|---|
| 2005 Navigator | 3 |
| 2006 Navigator (this page) | 7 |
| 2007 Navigator | 5 |
| 2008 Navigator | 7 |
| 2009 Navigator | 3 |
| 2010 Navigator | 4 |
1fire
When does it fail?
Of the 7 electrical complaints filed for the 2006 Lincoln Navigator, here's the actual mileage breakdown — failures cluster heaviest at 50,000-75,000 mi.
0-25k
25-50k
50-75k
75-100k
100-125k
125-150k
150k+
Each bar shows the share of total complaints filed at that mileage range. Peak failure window highlighted. Some owners report problems earlier; some make it well past 150,000 miles symptom-free. Maintenance habits and driving conditions shift the curve as much as mileage alone.
What stands out
No new NHTSA electrical complaint has been filed on this vehicle in over 13 years — the issue may be aging out of the active population.
Is there a fix? Manufacturer service bulletins
The manufacturer has issued service bulletins covering electrical on this vehicle — documented repair instructions, service campaigns, or warranty extensions sent to dealers. A TSB isn't a recall (it's not a free safety remedy), but it's the manufacturer acknowledging the issue and how to fix it.
When ordering a 2005 to 2008 remanufactured 5.4L 3v or 6.8L 3v engine, spark plug boots may be provided in the packaging. Replace all black spark plug boots from the original engine with the 'brown' spark plug boots, as provided. The updated 'brown' spark plug boots are longer than the black boots to accommodate a running change in the spark plug length. The ignition coil bodies and spring/resistor are transferable and only the rubber boots require replacement. Failure to install the spark plug boots provided with the replacement engine could lead to drivability concerns.
full bulletin at NHTSA ↗FORD/LINCOLN/MERCURY: MAY HAVE SLUDGE BUILDUP IN THROTTLE BODY LEADING TO LESS AIRFLOW OR ENGINE IDLING RPM FLUCTUATION AND HARD STARTS OR BATTERY DISCONNECT OR DEAD BATTERY AFTER KEEP ALIVE MEMORY (KAM) CLEAR. MODELS 2003-05 THUNDERBIRD, 05-06 MUSTANG, 06-08 FUSION, 04-05 EXPLORER, 05-06 EXPEDITION, 05-07 F-150; 2003-06 LS, 06 ZEPHYR, 05-06 NAVIGATOR; 06-08 MILAN.
full bulletin at NHTSA ↗VARIOUS ELECTRICAL CONCERNS - 3 BLOCK AUXILIARY RELAY BOX 1 CHAFING - SERVICE TIP.
full bulletin at NHTSA ↗DIAGNOSTIC TROUBLE CODES P0340/P0344/P0345/P0349 - 4.6L 3V AND 5.4L 3V.
full bulletin at NHTSA ↗Source: NHTSA manufacturer communications. Bring the bulletin number to your dealer or shop.
What owners are reporting 2 most recent
During normal driving conditions, the car gave in rapid succession a number of warnings and the car began to run rough and shift erratically. One related to the stability control system and the other was a "etc engine failsafe mode". After restarting the car the stability control error persisted. The dealer replaced sensor assembly 6l2z*3c187*aa for ~ $1000 for the part and labor + the battery…
Fuel gauge says zero miles to empty and will not take any gas more than a few gallons before kicking pump off. Gauge shows it's over heating but if you turn ignition off and turn right back on it resets and is fine. Codes come back saying nothing about fuel or cooling, but only something about speed control in the hub. Sounds like an electrical issue but no where to be found.
Had electrical trouble with your 2006 Lincoln Navigator?
File a complaint with NHTSA → It's free, official, and how every report above got here — owner filings are the federal safety record this page is built on.
Common questions
How serious is the electrical problem on the 2006 Lincoln Navigator?
It's a meaningful issue. 7 complaints have been filed and the failure mode causes operational problems for owners. Repairs average $850.
At what mileage does the electrical typically fail?
Based on the 7 complaints filed, electrical issues most often appear around 86,267 miles. Some report problems earlier; some make it well past 150,000 with no symptoms. Maintenance habits matter — vehicles that received timely fluid services and were not regularly overworked tend to last longer.
What does it cost to fix?
Independent shops typically charge around $850 for electrical repairs on this vehicle. Dealer pricing tends to run 20-40% higher. The exact figure depends on the specific failure mode, parts availability, and your local labor rates. If you're outside factory warranty, an extended service contract often covers this category.
Are there any recalls related to electrical?
No active recalls currently cover electrical issues on this vehicle. The complaints filed represent owner-reported failures that haven't risen to the level of a manufacturer-issued recall — but they're still worth knowing about before you buy or budget for repairs.
Related
Complaint and recall data sourced from the National Highway Traffic Safety Administration (NHTSA)
public records database. Verify the raw federal record at
nhtsa.gov/vehicle/2006/Lincoln/Navigator.
Severity ratings are derived from reported crashes, fires, injuries, and fatalities. Repair cost estimates are
independent-shop national averages and may differ in your area. Some links on this page are affiliate links.